Phylogenomics: A Primer 2nd Edition
Phylogenomics: A Primer Second Edition:
Additional ISBNs:
∗ Print ISBN: 0367028492, 978-0367028497, 9780367028497
∗ eText ISBN: 1000080390, 978-1000080391, 9781000080391
- See additional information on the Amazon.
Table of Contents
Cover
Half-Title
Title
Copyright
Dedication
Contents
Detailed Contents
Preface
Acknowledgements
Section I Foundations of Phylogenomics
1 What is Phylogenomics?
2 The Biology and Sequencing of Genetic Information: DNA, RNA, and Proteins
3 Evolutionary Principles: Populations and Trees
Section II Data
4 Data Storage—The Basics
5 Sequence Alignment and Searching Sequence Databases
6 Multiple Alignments
7 Genome Sequencing and Annotation
8 Genomics Databases: Genomes and Transcriptomes
9 Amplicon Databases: BoLD and Bacterial 16S rDNA Databases
Section III Phylogenetic/Phylogenomic Analysis
10 Introduction to Tree Building
11 Distance and Clustering
12 Maximum Likelihood
13 Search Strategies and Robustness
14 Rate Heterogeneity, Long Branch Attraction, and Likelihood Models
15 Bayesian Approaches in Phylogenetics
16 Incongruence of Gene Trees
17 Phylogenetic Programs and Websites
Section IV Population Genomics
18 Population Genetics and Genomes
19 Population Genomics Approaches
20 Detecting Natural Selection: The Basics
21 Refining the Approach to Natural Selection at the Molecular Level
Section V Phylogenomics in Action
22 Constructing Phylogenomic Matrices
23 Phylogenomics and the Tree of Life
24 Comparative Genomics
25 Environmental DNA (eDNA)
26 Phylogenomic Approaches to Understanding Gene Function and Evolution
Index
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